RNA-seq & Gene Expression
From raw FASTQ files to differential expression tables and core plots, using standard RNA-seq workflows including quality control, adapter trimming, alignment or quantification, count matrix generation, differential expression analysis and visualisation.
Genome Assembly & Annotation
Assembly and annotation for bacterial, fungal and plant genomes, including quality checks, assembly improvement, polishing support, genome annotation, summary statistics and downstream interpretation for publication or genome submission.
Small RNA & Exosome Analysis
Small RNA and exosome RNA profiling, including read processing, adapter trimming, locus or miRNA detection, quantification, differential comparisons and publication-ready visualisation using suitable tools such as ShortStack, miRDeep2 and custom workflows.
Metagenomics & Microbiome
16S or shotgun metagenomics analysis including quality control, taxonomic profiling, diversity summaries, comparative plots and concise reports for microbial community interpretation.
Comparative Genomics
Genome comparison workflows including ANI-based relatedness, phylogenetic overview, pan-genome support, AMR/plasmid/BGC summaries and comparative tables to support strain-level or species-level biological questions.
Consulting & Custom Pipelines
Short consultations or full project planning for custom workflows, tool selection, Linux/R/Python/Bash pipeline setup, troubleshooting, data interpretation and manuscript-ready result preparation tailored to your study.